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June 2008

June 30, 2008

World-Wide Web Virtual Library: Microscopy

http://www.ou.edu/research/electron/www-vl/long.shtml

This page of the WWW-Virtual Library covers all aspects of light microscopy, electron microscopy and other forms of microscopy.

Topics can be viewed individually, or as part of one long list. The newest links are periodically incorporated as part of the main list, and are also presented as updates. The links on this site were last checked using Cyberspider on November 28, 2000, when all 2483 links were evaluated.

Example category - Microscopy:Medically-Oriented Sites

  • Clinical Microbiology Multimedia Course
  • Cornea Imaging and Testing
  • Current Projects at MedNet
  • Cutaneous Pharmacology and Toxicology Center - North Carolina State University, College of Veterinary Medicine
  • Cytotechnology Career and Program Information
  • Department of Cell Biology and Neuroanatomy
  • Department of Pathology, University of Melbourne
  • Internet Resources for Pathology and Laboratory Medicine - University of Michigan Department of Pathology
  • Electron Microscopy Unit at the Medical Faculty
  • Genome Data Base
  • University of Hannover - Electron Microscopy in Medicine and Biology
  • Harvard Biological Laboratories - Genome Research
  • Histology and Cell Biology - histology images from Loyola Medical Education Network
  • The Histotech's Home Page - Internet info for the Histotechnologist
  • Dr. Greenson's Gastrointestinal and Liver Pathology Home Page Extravaganza - GI and liver pathology
  • Introduction to Blood Morphology by J.R. McArthur
  • Keck Neural Imaging Laboratory
  • Martindale's Health Science Guide Pathology & Virology Center
  • MedNet
  • MedWeb: Microbiology and Virology
  • MedWeb:Pathology
  • Microscopic Morphology - bacteria morphology and gram staining
  • Neuroengineering and Neuroscience Center
  • Neurosciences
  • OncoLink
  • Pathology 703 - University of Wisconsin Medical School
  • Pathology and Laboratory Medicine
  • Renal Biopsy Case Reviews
  • Rockefeller University - Laboratory of Bacterial Pathogenesis and Immunology
  • TAMU - Department of Medical Physiology
  • University of Alberta - Medical/Dental Electron Microscopy Unit
  • Virus Ultrastructure - Animal viruses, images, tutorial and techniques, Linda Stannard, University of Cape Town
  • Webpath: Internet Pathology Laboratory
  • June 27, 2008

    MDPixx.com

    In the coming weeks I will begin to post images in collaboration with MDPixx.com for viewing and sharing.  This will allow me to share a collection of nearly 25,000 gross and microscopic images I have collected.  Their real value is in sharing of information rather than collecting and storing for rare use solely.  This platform allows me to do that with excellent support and would gather several areas of common ground readers of this blog can explore as well.  Welcome MDPixx.com! 

    Recent example uploaded of a plexiform neurofibroma I encountered - nice gross example with multiple gross fields stitched together.

    Download MDPixx.swf (247.5K)

    June 26, 2008

    KRAS Predicts Which Colorectal Cancer Patients Will Benefit from Cetuximab

    by Allison Gandey

    June 2, 2008 (Chicago, Illinois) — KRAS testing should be routinely conducted in all colorectal cancer patients immediately after diagnosis, report researchers. Presenting here at the American Society of Clinical Oncology (ASCO) 44th Annual Meeting, investigators showed that KRAS mutations, which are found in 30% to 45% of all colorectal tumors, are excellent indicators of which patients will benefit from the addition of cetuximab (Erbitux, Bristol-Myers Squibb).

    The new results are from the CRYSTAL trial, a phase 3 study assessing the effectiveness of adding cetuximab to FOLFIRI as first-line therapy. The CRYSTAL trial was first presented at ASCO last year. As reported by Medscape Oncology at that meeting, the study showed that combination therapy reduced the risk for metastatic colorectal cancer growth or spread by 15%.

    Despite the positive finding, many were underwhelmed by the study. At the time, press-briefing moderator William Blackstock, MD, from the Wake Forest University School of Medicine, in Winston-Salem, North Carolina, called the findings "modest." He said the new cetuximab combination simply added to a number of existing regimens.

    Dr. Blackstock explained that although the combination would provide an important new option for some patients, he did not anticipate that it would change clinical practice. "It's not that impressive," he said.

    Lead investigator and presenter Eric Van Cutsem, MD, from the University Hospital in Leuven, Belgium, told Medscape Oncology that this new finding is more exciting.

    "Some people were disappointed by the magnitude of the benefit we showed last year," Dr. Van Cutsem told reporters attending a press briefing. But results taking KRAS mutations into account are much more clinically meaningful, he noted.

    Patients With KRAS Mutations Did Not Benefit From Cetuximab

    Cetuximab is a monoclonal antibody that targets the epidermal growth-factor receptor. Patients received cetuximab 400 mg/m2 as an initial dose and then 250 mg/m2 per week. FOLFIRI, comprised of irinotecan 180 mg/m2, folinic acid 400 mg/m2, 5-fluorouracil bolus 400 mg/m2, and 5-fluorouracil infusion 2400 mg/m2 over 46 hours, was administered every 2 weeks.

    Researchers had access to tumor samples from 587 of the nearly 2000 patients in the original trial. KRAS mutations were detected in 35.6% of patients.

    Investigators found that among patients with normal KRAS, 59.3% responded to treatment and 43.2% responded to chemotherapy alone. These patients had a 32% decreased risk of progression with the addition of cetuximab (hazard ratio, 0.85 for all patients vs 0.68 in KRAS wild-type population).

    Helping journalists put the results into context, Julie Gralow, ASCO's cancer communications committee chair and associate professor of medicine from the University of Washington, in Seattle, said this study will help clinicians identify who will benefit from therapy and who won't.

    She estimates that about one third of colorectal cancer patients are KRAS-mutation positive. Doctors can therefore withhold treatment from such patients and spare the expense and toxicities of therapy.

    The new CRYSTAL results were presented at the meeting's plenary session. Gail Eckhardt, MD, from the University of Colorado, in Denver, discussed the findings after the talk. "Hopefully, this is only the beginning of the new era of targeted therapies," she said.

    Dr. Eckhardt agreed that colorectal cancer patients should be tested for KRAS mutations and therapy targeted accordingly. She said the tests are sensitive, reproducible, and feasible.

    Assays are already available and clinicians won't have to do another biopsy, Dr. Van Cutsem emphasized. "There is no need for a fresh tumor sample for testing."

    The researchers report having financial ties to Merck.

    American Society of Clinical Oncology 2008 Annual Meeting: Abstract 2. June 1, 2008. Abstract



    Related Links

    June 25, 2008

    Journal of Clinical Pathology publishes paper penned solely by undergraduate student

    Utah's Deseret News (6/24, Davis) reported that some in the research community "see the acceptance of a Brigham Young University undergraduate's article by" the Journal of Clinical Pathology "as an accomplishment well worth the spotlight." Moreover, the fact that Brett Alldredge "devised, researched, and wrote the article on his own -- an accomplishment that rarely is achieved by a doctoral student, much less an undergraduate" -- is considered "incredible." The undergraduate's "article explores recent publications on connections between individual cells called 'gap junction,' which are common in and important to most human tissue, and their relationships with different diseases or disorders as a result of malfunction." One of his professors, David Busath, said that "Alldredge wrote the article by himself because there was little he as a professor could add to it by way of expertise." Runjan Chetty, editor of the journal, said, "It is most unusual to have undergraduates publish on their own." But "[t]his is an important area of research," and "Brett's contribution will be widely read, as it will interest several who are working in the field," Chetty added.

    Three-Dimensional Aortic MRI Helps Detect High-Risk Plaque

    Reuters Health Information 2008. © 2008 Reuters Ltd.

    NEW YORK (Reuters Health) May 28 - Three dimensional MRI using a 3 Tesla system appears to be reliable and more accurate than transesophageal echocardiography for revealing aortic high-risk plaques in acute stroke patients, German researchers report in the May issue of the Journal of Neurology, Neurosurgery, & Psychiatry.

    "Three-D MRI," lead investigator Dr. Andreas Harloff told Reuters Health, "provided a high sensitivity for the detection of aortic high-risk sources of cerebral embolism."

    It was demonstrated "that 3-D MRI is a promising tool for the detection of high-risk plaques in patients with undefined stroke etiology -- cryptogenic stroke -- despite extensive routine diagnostics including transesophageal echocardiography," he said.

    Dr. Harloff and colleagues at University Hospital Freiburg used both methods to examine 74 acute stroke patients. MRI detected plaques in 50% of the patients compared with 31.1% of patients using echocardiography. The number of high-risk plaques detected by MRI was also substantially higher than that with echocardiography (74 versus 47, respectively).

    In addition, MRI detected aortic high-risk sources of brain ischemia in 8 of 26 patients with cryptogenic stroke, which were not found during standard diagnostics.

    Dr. Harloff pointed out: "The detection of additional aortic high-risk pathologies by 3D MRI has the potential to guide and thus improve the prevention of recurrent stroke."

    Nevertheless, he and his colleagues conclude that "before this novel MRI technique can be generally recommended, its diagnostic value needs to be evaluated rigorously at various imaging sites."

    In an accompanying editorial, Dr. Emmanuel Touze of Centre Hospitalier Sainte-Anne, Paris, agrees and concludes that: "Despite some limitations, the results of this work are important because they show the feasibility of the technique and give us new insights into what can be done in this field."

    J Neurol Neurosurg Psychiatry 2008;79:489,540-546.

    June 24, 2008

    BioImagene Launches AgilityBio, a New Generation Contract Research Organization Leveraging Its Innovative Digital Pathology System

    CUPERTINO, Calif.--(BUSINESS WIRE)--BioImagene, a leading provider of innovative digital pathology solutions for preclinical research and cancer diagnosis, launched AgilityBio -- an integrated contract research organization (CRO). AgilityBio offers preclinical and clinical services in partnership with well established Indian CROs. It provides its clients with a US-based customer liaison team to facilitate management of international projects.

    Nagesh Mhatre, PhD, Halo Fund, commented, AgilityBio brings out higher efficiency and high quality solutions for research and clinical pathology. The critical information sharing among pathologists at a rapid speed is an invaluable contribution.

    Anula Jayasuria, MD., PhD, Managing Director, Evolvence India Life Sciences Fund, commented, I am very confident that AgilityBio will make a significant impact in the outsourcing marketplace. AgilityBios competitive advantage is bridging the distance between US customers and Indian service providers.

    AgilityBios integrated service offerings include preclinical services, Phase I - IV clinical and diagnostic trials and biomarker discovery for the pharmaceutical and biotech industries. It has the advantage of using BioImagene's web-based digital pathology technology, to provide access to image data anywhere, any time.

    Mohan Uttarwar, CEO, BioImagene, said, "AgilityBio will bring about a synergy between cutting-edge digital pathology technologies and India's vibrant pharmaceutical and CRO industry eager to work with state of the art R&D methods. Using high throughput techniques is not just an incremental improvement, but a major step towards easing bottlenecks and reducing time to market for drugs. We are confident that the AgilityBio team of experienced professionals will contribute to accelerating the global drug development process."

    Roli Khattri, PhD, Chief Scientific Officer, AgilityBio, explained, "AgilityBio is an integrated CRO. We are technology driven with the capability to deliver high quality services on a global stage. Our goal is to help our customers achieve their R&D goals with increased efficiency using innovative technology solutions."

    About AgilityBio

    AgilityBio, an affiliate of BioImagene, provides the next generation of integrated outsourcing solutions for pharmaceutical and biotech companies. AgilityBio facilitates outsourcing of preclinical studies, therapeutic and diagnostic clinical trials and biomarker studies.

    About BioImagene

    BioImagene is a leading provider of total digital pathology solutions for applications including clinical diagnostics and drug discovery. BioImagene products are FDA cleared for specific clinical applications, and are intended for research use for other applications.

    June 20, 2008

    Mayo launches YouTube channel

    Mayo Clinic has gone YouTube.

    "Mayo Clinic's YouTube channel was quietly launched about a month ago, and has typically been in the top 30-40 channels among nonprofits," said Lee Aase, Mayo's manager for syndication and social media, who blogs at Social Media University, Global (SMUG)

    The channel's description says it's "a place to see what makes Mayo Clinic special, and to watch videos about Mayo's latest research and treatment advances."

    The channel has racked up more than 3,000 views.

    Mayo launched the YouTube channel "to make its videos more accessible to a broader audience and to help raise Internet visibility," the clinic told employees in a newsletter last week.

    The channel touts itself as the 33rd-most viewed non-profit channel on YouTube this month.

    Mayo continues to reach out to patients in new and different ways. In February, the clinic launched a Facebook page that encourages past patients to share their stories. Mayo on Facebook now has more than 1,200 online "fans" who have added the clinic's Facebook page to their user profiles.

    Mayo also offers a podcast blog with in-depth information about topics like heart failure, celiac disease and surgical safety. Mayo has gone YouTube partly out of necessity.

    "A recently published study indicated that about 37 percent of all videos viewed online are seen through YouTube," Aase said. "We need to put Mayo Clinic video where people can find it instead of just expecting them to come to our Web sites. But the YouTube channel does have a link to mayoclinic.org, and through that to other Mayo sites, so sharing in this way should lead to more traffic."

    The YouTube channel will help build Mayo's name recognition and reputation, Aase said, because Web surfers will become more aware of Mayo's research and treatment advances.

    "We think we will build awareness of Mayo by 'word of mouse' in the 21st century, much as word of mouth was chiefly responsible for building Mayo's reputation in the 20th century," he said.

    What's next for Mayo online?

    "We can't discuss online projects that aren't ready yet," Aase said. But he noted Mayo's popular health blogs, like the Mayo Quit Smoking Blog.

    June 19, 2008

    Aperio to Present at Jefferies Second Annual Healthcare Conference

    Press Release from Aperio

    Vista, CA – June 18, 2008 – Aperio Technologies, Inc., the leading provider of digital pathology systems and services for the healthcare and life sciences industry, announced today that Dirk Soenksen, chief executive officer, will speak at Jefferies & Company Inc.’s Healthcare Conference to be held June 26 - 28, 2008 in New York, NY.

    The conference will showcase more than 170 public and private companies and industry experts to address the areas of biotechnology, CROs, healthcare services, healthcare IT, managed care, medical devices & diagnostics, and specialty pharmaceuticals. Synergies created by this combined event are intended to provide Jefferies’ institutional clients with broader access to leading companies in these areas.

    The Aperio presentation will be held at 8:00 a.m. eastern time on June 26th. During his session, Mr. Soenksen will provide an overview of the digital pathology market, and discuss Aperio’s strategies for leveraging its market leadership position to capitalize on this emerging multi-billion dollar market. Listeners can access the presentation live and in replay via webcast at www.jefferies.com. The webcast will be archived at the Aperio website following the presentation.

    “Jefferies’ conference features an impressive collection of healthcare and life science companies,” stated Dirk Soenksen, CEO of Aperio. “We are grateful for the opportunity to present Aperio’s digital pathology vision and strategy.”

    About Aperio

    Aperio is digitizing pathology. We provide systems and services for digital pathology, which is an environment for the management and interpretation of pathology information that originates with the digitization of a glass slide. Aperio’s award-winning ScanScope® slide scanning systems and Spectrum™ digital pathology information management software improve the efficiency and quality of pathology services for pathologists and other professionals. Applications include education, remote viewing, archival and retrieval, basic research, and image analysis. Aperio's products are FDA cleared for specific clinical applications, and are intended for research and education use for other applications. For more information, please visit www.aperio.com.

    June 18, 2008

    Quantum Dots for Cancer Diagnosis and Therapy: Biological and Clinical Perspectives

    Hua Zhang; Douglas Yee; Chun Wang

    Nanomedicine.  2008;3(1):83-91.  ©2008 Future Medicine Ltd.
    Posted 06/05/2008

    Abstract and Introduction
    Abstract
    Quantum dots (QDs) are semiconductor nanocrystals that emit fluorescence on excitation with a light source. They have excellent optical properties, including high brightness, resistance to photobleaching and tunable wavelength. Recent developments in surface modification of QDs enable their potential application in cancer imaging. QDs with near-infrared emission could be applied to sentinel lymph-node mapping to aid biopsy and surgery. Conjugation of QDs with biomolecules, including peptides and antibodies, could be used to target tumors in vivo. In this review, we summarize recent progress in developing QDs for cancer diagnosis and treatment from a clinical standpoint and discuss future prospects of further improving QD technology to identify metastatic cancer cells, quantitatively measure the level of specific molecular targets and guide targeted cancer therapy by providing biodynamic markers for target inhibition.

    Introduction
    Imaging is an important clinical modality used in determining appropriate cancer therapy. Current imaging techniques, including x-ray, computed tomography, ultrasound, radionuclide imaging and MRI, have been used widely for cancer screening and staging, determining the efficacy of cancer therapy and monitoring recurrence (reviewed in).[1-4] However, current imaging techniques have two major limitations. First, they do not have sufficient sensitivity to detect small numbers of malignant cells in the primary or metastatic sites. Second, the imaging techniques have not been developed to detect specific cancer cell-surface markers. In many instances, these cell-surface markers might be targets for cancer therapy and might assist in the diagnosis and staging of cancer. These limitations demand improvement in current imaging techniques and the development of new imaging probes that are highly sensitive and biospecific. Quantum dot (QD) imaging probes, although still in the early development stage, provide the potential to fulfill these requirements for in vivo cancer imaging.

    The composition, optical properties and bioconjugation of QDs have been reviewed extensively.[5-7] In this article, we focus on addressing recent progress and future challenges in cancer imaging using QDs from biological and clinical perspectives and discuss the potential of QD imaging to achieve high sensitivity and specificity that might bring significant impact to how cancer is diagnosed and treated in the clinical setting.

    June 17, 2008

    A Vendor-Neutral Library and Viewer for Whole-Slide Images

    Paper by Adam Goode and M. Saryanarayanan at Carnegie Mellon University

    Introduction of paper:

    Whole-slide images, also known as virtual slides, are large, high resolution images used in digital pathology. Reading these images using standard image tools or libraries is a challenge because these tools are typically designed for images that can comfortably be uncompressed into RAM or a swap file. Whole-slide images routinely exceed RAM sizes, often occupying tens of gigabytes when uncompressed. Additionally, whole-slide images are typically multi-resolution, and only a small amount of image data might be needed at a particular resolution.

    There is no universal data format for whole-slide images, so each vendor implements its own formats, libraries, and viewers. Vendors typically do not document their formats. Even when there is documentation, important details are omitted. Because a vendor’s library or viewer is the only way to view a particular whole-slide image, doctors and researchers can be unnecessarily tied to a particular vendor. Finally, few (if any) vendors provide libraries and viewers for non-Windows platforms. Some have gone with a server approach, pushing tiles through a web server, or using Java applets, but these approaches have shortcomings in high-latency or non-networked environments.

    In this paper, we present a solution to this problem in the form of a vendor-neutral library for reading whole-slide images, as well as a simple but powerful viewer built on top of the library.

    Download CMU-CS-08-136.pdf (2425.8K)

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